PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616843.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 419aa    MW: 44925.6 Da    PI: 8.9371
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616843.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.4e-121944227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C +++rtG C yG+rC+F+H++
  XP_013616843.1 19 DEPDCVYYLRTGVCGYGSRCRFNHPR 44
                    6899********************96 PP

2zf-CCCH37.83.3e-126590227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C++f+rtGtC++G++Ck++H++
  XP_013616843.1 65 GQPVCQHFMRTGTCRFGASCKYHHPR 90
                    5789********************96 PP

3zf-CCCH406.5e-13113137226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG+Ck+G++C+F+H+
  XP_013616843.1 113 GEKECSYYMRTGQCKFGSTCRFHHP 137
                     7899********************9 PP

4zf-CCCH41.22.7e-13264289126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++f+rtG Ck+G++C+F+H+
  XP_013616843.1 264 PGQPECQYFMRTGDCKFGNSCRFHHP 289
                     5789*********************9 PP

5zf-CCCH36.49e-12309335127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++t++C++fa+ G Ck+G+ CkF H++
  XP_013616843.1 309 PGTAPCSHFAQHGVCKFGPACKFDHSM 335
                     68***********************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2111745IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-51744IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-81944IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-62146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-52344IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-66390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.3056391IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-66591IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-106590IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-56890IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356111139IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10113137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4117136IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-7263290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07263291IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10265289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6267291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5269289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6307336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615308336IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6308335IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9309334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-5311334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MWRLGLRGGG GESYPERPDE PDCVYYLRTG VCGYGSRCRF NHPRNRAPVL GGLRTEAGEF  60
PERMGQPVCQ HFMRTGTCRF GASCKYHHPR QGGRDSFTTP TSLSYMGLPL RPGEKECSYY  120
MRTGQCKFGS TCRFHHPVPP GVQAPSLHQL STSPGPAIYP PLQSQSVPAS QQFGVAIPRP  180
QLLQGSYVQS PYGTYNQMVL PPPGMIPYSG WNPYQASISA MPSPGTQPSM VSSSVYGIRP  240
LSPPVPAYPS GPSSNKEQSF PQRPGQPECQ YFMRTGDCKF GNSCRFHHPL EAASPKGVTL  300
SQIGLPIRPG TAPCSHFAQH GVCKFGPACK FDHSMGTSSL TYSPSASSLT GMPVTPYPLG  360
SSSLGISAPS SSSSLSDQRI ELHSSSSVKP TNTTTGGSEI LAAETKNGDS ASIEVKTSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616843.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A0D3AJS60.0A0A0D3AJS6_BRAOL; Uncharacterized protein
STRINGBra023683.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein